Detailed Information

>>> Option 1: Click the button below to Download all the analysis

>>> Option 2: View all the result online

Basic Information

The table below details the source and basic information of this item.

Title Content
iBAD ID iBAD_0000082
Karyotype Trisomy 21
Type DNA methylation
Diseases Down syndrome
Organism Homo sapiens
Tissue Maternal uterine
Cell Line Placenta
Platform GPL10999
Accession GSE42074
GEO Title Global DNA Hypermethylation in Down Syndrome Placenta [Bisulfite-Seq]
PMID 23754950
Article Title Global DNA hypermethylation in down syndrome placenta
Author Jin S, Lee YK, Lim YC, Zheng Z, Lin XM, Ng DP, Holbrook JD, Law HY, Kwek KY, Yeo GS, Ding C
GEO Link https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE42074
Pub Link https://www.ncbi.nlm.nih.gov/pubmed/23754950
FTP Download ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE42nnn/GSE42074/
SRA Run Selector https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA179204
SRP SRP017124

Bed Download

The methylation information with BED format was performed by Bismark and was provided here. Click the options to download the corresponding list.

Differential Methylation

The differential methylation was produced by methylKit, an R package. There would be no result if the experiment design cannot meet the requirement of methylKit.

Genome Browser

You can browse the expression pattern of this item as follows, or click “Full-screen view” to display the patterns of all items stored in BDdb. By this, you are allowed to compare different groups observed by different sequencing approaches.

ShenZhen, Guangdong province, China