Detailed Information

>>> Option 1: Click the button below to Download all the analysis

>>> Option 2: View all the result online

Basic Information

The table below details the source and basic information of this item.

Title Content
iBAD ID iBAD_0000075
Karyotype Trisomy 8
Type DNA methylation
Diseases Warkany syndrome 2
Organism Homo sapiens
Tissue Blood
Cell Line PBMC
Platform GPL10999
Accession GSE38483
GEO Title Global DNA methylation study of trisomy 8 AML
PMID 25674022
Article Title Trisomy 8 Acute Myeloid Leukemia Analysis Reveals New Insights of DNA Methylome with Identification of HHEX as Potential Diagnostic Marker
Author Saied MH, Marzec J, Khalid S, Smith P et al.
GEO Link https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE38483
Pub Link https://www.ncbi.nlm.nih.gov/pubmed/25674022
FTP Download ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE38nnn/GSE38483/
SRA Run Selector https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA168015
SRP SRP013560

Bed Download

The methylation information with BED format was performed by Bismark and was provided here. Click the options to download the corresponding list.

Differential Methylation

The differential methylation was produced by methylKit, an R package. There would be no result if the experiment design cannot meet the requirement of methylKit.

Genome Browser

You can browse the expression pattern of this item as follows, or click “Full-screen view” to display the patterns of all items stored in BDdb. By this, you are allowed to compare different groups observed by different sequencing approaches.

ShenZhen, Guangdong province, China