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Basic Information
The table below details the source and basic information of this item.
| Title | Content |
|---|---|
| iBAD ID | iBAD_0000073 |
| Karyotype | Trisomy 21 |
| Type | ChIP-Seq |
| Diseases | Down syndrome |
| Organism | Mus musculus |
| Tissue | Bone marrow |
| Cell Line | B cell |
| Platform | GPL13112 |
| Accession | GSE48534 |
| GEO Title | Triplication of a 21q22 region contributes to B cell transformation through HMGN1 overexpression and loss of histone H3 Lys27 trimethylation |
| PMID | 24747640 |
| Article Title | Triplication of a 21q22 region contributes to B cell transformation through HMGN1 overexpression and loss of histone H3 Lys27 trimethylation |
| Author | Lane AA, Weinstock DM |
| GEO Link | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE48534 |
| Pub Link | https://www.ncbi.nlm.nih.gov/pubmed/24747640 |
| FTP Download | ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE48nnn/GSE48534/ |
| SRA Run Selector | https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA210448 |
| SRP | SRP026543 |
Peak
Here provides raw peaks detected by MACS2. Click the options to download the corresponding list.
Peak annotation
CHIPseeker, an R package, was employed to annotate the detected peaks. Click the options to download the corresponding list.
Differential Peak
The differential peaks were produced by DiffBind, an R package. There would be no result if the experiment design cannot meet the requirement of DiffBind.
Genome Browser
You can browse the expression pattern of this item as follows, or click “Full-screen view” to display the patterns of all items stored in BDdb. By this, you are allowed to compare different groups observed by different sequencing approaches.