Detailed Information

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Basic Information

The table below details the source and basic information of this item.

Title Content
iBAD ID iBAD_0000073
Karyotype Trisomy 21
Type ChIP-Seq
Diseases Down syndrome
Organism Mus musculus
Tissue Bone marrow
Cell Line B cell
Platform GPL13112
Accession GSE48534
GEO Title Triplication of a 21q22 region contributes to B cell transformation through HMGN1 overexpression and loss of histone H3 Lys27 trimethylation
PMID 24747640
Article Title Triplication of a 21q22 region contributes to B cell transformation through HMGN1 overexpression and loss of histone H3 Lys27 trimethylation
Author Lane AA, Weinstock DM
GEO Link https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE48534
Pub Link https://www.ncbi.nlm.nih.gov/pubmed/24747640
FTP Download ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE48nnn/GSE48534/
SRA Run Selector https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA210448
SRP SRP026543

Peak

Here provides raw peaks detected by MACS2. Click the options to download the corresponding list.

Peak annotation

CHIPseeker, an R package, was employed to annotate the detected peaks. Click the options to download the corresponding list.

Differential Peak

The differential peaks were produced by DiffBind, an R package. There would be no result if the experiment design cannot meet the requirement of DiffBind.

Genome Browser

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