Detailed Information

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Basic Information

The table below details the source and basic information of this item.

Title Content
iBAD ID iBAD_0000069
Karyotype Trisomy 21
Type ChIP-Seq
Diseases Down syndrome
Organism Mus musculus
Tissue Embryo
Cell Line Embryonic stem cells
Platform GPL13112
Accession GSE59378
GEO Title HSA21 Single-minded 2 (Sim2) binding sites co-localize with super-enhancers and pioneer transcription factors in pluripotent mouse ES cells
PMID 25955728
Article Title HSA21 Single-Minded 2 (Sim2) Binding Sites Co-Localize with Super-Enhancers and Pioneer Transcription Factors in Pluripotent Mouse ES Cells
Author Letourneau A, Cobellis G, Fort A, Santoni FA, Garieri M, FalcoNonet E, Ribaux P, Vannier A, Guipponi M, Carninci P, Borel C, Antonarakis SE
GEO Link https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE59378
Pub Link https://www.ncbi.nlm.nih.gov/pubmed/25955728
FTP Download ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE59nnn/GSE59378/
SRA Run Selector https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA255218
SRP SRP044302

Peak

Here provides raw peaks detected by MACS2. Click the options to download the corresponding list.

Peak annotation

CHIPseeker, an R package, was employed to annotate the detected peaks. Click the options to download the corresponding list.

Differential Peak

The differential peaks were produced by DiffBind, an R package. There would be no result if the experiment design cannot meet the requirement of DiffBind.

Genome Browser

You can browse the expression pattern of this item as follows, or click “Full-screen view” to display the patterns of all items stored in BDdb. By this, you are allowed to compare different groups observed by different sequencing approaches.

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