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Basic Information
The table below details the source and basic information of this item.
| Title | Content |
|---|---|
| iBAD ID | iBAD_0000053 |
| Karyotype | Trisomy 21 |
| Type | DNase-Seq |
| Diseases | Down syndrome |
| Organism | Homo sapiens |
| Tissue | Connective |
| Cell Line | Fibroblasts |
| Platform | GPL11154 |
| Accession | GSE55425 |
| GEO Title | Domains of genomewide gene expression dysregulation in Down syndrome [Dnase HS mapping] |
| PMID | 24740065 |
| Article Title | Domains of genome-wide gene expression dysregulation in Down's syndrome |
| Author | Letourneau A, Santoni FA, Bonilla X, Sailani MR, Gonzalez D, Kind J, Chevalier C, Thurman R, Sandstrom RS, Hibaoui Y, Garieri M, Popadin K, FalcoNonet E, Gagnebin M, Gehrig C, Vannier A, Guipponi M, Farinelli L, Robyr D, Migliavacca E, Borel C, Deutsch S, Feki A, Stamatoyannopoulos JA, Herault Y, van Steensel B, Guigo R, Antonarakis SE |
| GEO Link | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE55425 |
| Pub Link | https://www.ncbi.nlm.nih.gov/pubmed/24740065 |
| FTP Download | ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE55nnn/GSE55425/ |
| SRA Run Selector | https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA239811 |
| SRP | SRP039347 |
Peak
Here provides raw peaks detected by MACS2. Click the options to download the corresponding list.
Peak annotation
CHIPseeker, an R package, was employed to annotate the detected peaks. Click the options to download the corresponding list.
Differential Peak
The differential peaks were produced by DiffBind, an R package. There would be no result if the experiment design cannot meet the requirement of DiffBind.
Genome Browser
You can browse the expression pattern of this item as follows, or click “Full-screen view” to display the patterns of all items stored in BDdb. By this, you are allowed to compare different groups observed by different sequencing approaches.