Detailed Information

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Basic Information

The table below details the source and basic information of this item.

Title Content
iBAD ID iBAD_0000053
Karyotype Trisomy 21
Type DNase-Seq
Diseases Down syndrome
Organism Homo sapiens
Tissue Connective
Cell Line Fibroblasts
Platform GPL11154
Accession GSE55425
GEO Title Domains of genomewide gene expression dysregulation in Down syndrome [Dnase HS mapping]
PMID 24740065
Article Title Domains of genome-wide gene expression dysregulation in Down's syndrome
Author Letourneau A, Santoni FA, Bonilla X, Sailani MR, Gonzalez D, Kind J, Chevalier C, Thurman R, Sandstrom RS, Hibaoui Y, Garieri M, Popadin K, FalcoNonet E, Gagnebin M, Gehrig C, Vannier A, Guipponi M, Farinelli L, Robyr D, Migliavacca E, Borel C, Deutsch S, Feki A, Stamatoyannopoulos JA, Herault Y, van Steensel B, Guigo R, Antonarakis SE
GEO Link https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE55425
Pub Link https://www.ncbi.nlm.nih.gov/pubmed/24740065
FTP Download ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE55nnn/GSE55425/
SRA Run Selector https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA239811
SRP SRP039347

Peak

Here provides raw peaks detected by MACS2. Click the options to download the corresponding list.

Peak annotation

CHIPseeker, an R package, was employed to annotate the detected peaks. Click the options to download the corresponding list.

Differential Peak

The differential peaks were produced by DiffBind, an R package. There would be no result if the experiment design cannot meet the requirement of DiffBind.

Genome Browser

You can browse the expression pattern of this item as follows, or click “Full-screen view” to display the patterns of all items stored in BDdb. By this, you are allowed to compare different groups observed by different sequencing approaches.

ShenZhen, Guangdong province, China